220.127.116.11. External tools
SATé breaks the tree topology down into subproblems during each round of analysis and realigns the data for each subset, merges the alignments into a full alignment and re-estimates the tree for full alignment.
- ‘Aligner’ is used to select the multiple sequence alignment tool to produce the initial full alignment.
- ‘Merger’ is used to select the multiple sequence alignment tool to merge the alignments of subproblems into a bigger and final multiple sequence alignment.
- ‘Tree estimator’ uses RAxML for tree estimation with the chosen evolutionary ‘Model’.